J3_9FRL_011

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CGCCAG*CGAGAC*GCCACG

Length

18 nucleotides

Bulged bases

9FRL|1|2|C|1022

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|2|C|1020
9FRL|1|2|G|1021
9FRL|1|2|C|1022
9FRL|1|2|C|1023
9FRL|1|2|A|1024
9FRL|1|2|G|1025
*
9FRL|1|2|C|1064
9FRL|1|2|G|1065
9FRL|1|2|A|1066
9FRL|1|2|G|1067
9FRL|1|2|A|1068
9FRL|1|2|C|1069
*
9FRL|1|2|G|1151
9FRL|1|2|C|1152
9FRL|1|2|C|1153
9FRL|1|2|A|1154
9FRL|1|2|C|1155
9FRL|1|2|G|1156

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain F

Small ribosomal subunit protein uS5

Chain K

Small ribosomal subunit protein uS9

Chain L

Small ribosomal subunit protein uS10

Chain P

Small ribosomal subunit protein uS14

Chain S

Small ribosomal subunit protein eS17

Chain Z

Small ribosomal subunit protein uS3

Chain a

aS34