J3_9FRL_015
3D structure
- PDB id
- 9FRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- CAAUG*CGCAGUUG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9FRL|1|2|U|1203, 9FRL|1|2|U|1266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9FRL|1|2|C|1200
9FRL|1|2|A|1201
9FRL|1|2|A|1202
9FRL|1|2|U|1203
9FRL|1|2|G|1204
*
9FRL|1|2|C|1260
9FRL|1|2|G|1261
9FRL|1|2|C|1262
9FRL|1|2|A|1263
9FRL|1|2|G|1264
9FRL|1|2|U|1265
9FRL|1|2|U|1266
9FRL|1|2|G|1267
*
9FRL|1|2|C|1298
9FRL|1|2|G|1299
9FRL|1|2|A|1300
9FRL|1|2|G|1301
Current chains
- Chain 2
- rRNA 16S
Nearby chains
- Chain H
- Small ribosomal subunit protein uS7
- Chain O
- Small ribosomal subunit protein uS13
- Chain U
- Small ribosomal subunit protein eS19
- Chain c
- Small ribosomal subunit protein eS25
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