3D structure

PDB id
9FRL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position
Experimental method
ELECTRON MICROSCOPY
Resolution
2.97 Å

Loop

Sequence
CAAUG*CGCAGUUG*CGAG
Length
17 nucleotides
Bulged bases
9FRL|1|2|U|1203, 9FRL|1|2|U|1266
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9FRL|1|2|C|1200
9FRL|1|2|A|1201
9FRL|1|2|A|1202
9FRL|1|2|U|1203
9FRL|1|2|G|1204
*
9FRL|1|2|C|1260
9FRL|1|2|G|1261
9FRL|1|2|C|1262
9FRL|1|2|A|1263
9FRL|1|2|G|1264
9FRL|1|2|U|1265
9FRL|1|2|U|1266
9FRL|1|2|G|1267
*
9FRL|1|2|C|1298
9FRL|1|2|G|1299
9FRL|1|2|A|1300
9FRL|1|2|G|1301

Current chains

Chain 2
rRNA 16S

Nearby chains

Chain H
Small ribosomal subunit protein uS7
Chain O
Small ribosomal subunit protein uS13
Chain U
Small ribosomal subunit protein eS19
Chain c
Small ribosomal subunit protein eS25

Coloring options:

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