J3_9FS6_007

3D structure

PDB id

9FS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS6|1|2|C|900
9FS6|1|2|A|901
9FS6|1|2|A|902
9FS6|1|2|G|903
*
9FS6|1|2|C|1308
9FS6|1|2|U|1309
9FS6|1|2|A|1310
9FS6|1|2|G|1311
9FS6|1|2|U|1312
9FS6|1|2|A|1313
9FS6|1|2|A|1314
*
9FS6|1|2|U|1336
9FS6|1|2|G|1337
9FS6|1|2|A|1338
9FS6|1|2|A|1339
9FS6|1|2|U|1340
9FS6|1|2|A|1341
9FS6|1|2|C|1342
9FS6|1|2|G|1343

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain K

Small ribosomal subunit protein uS9

Chain X

Small ribosomal subunit protein eS28