J3_9FS6_009

3D structure

PDB id

9FS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUCAAUU(OMG)*CUGGAAUCUUAC*GGCCG

Length

25 nucleotides

Bulged bases

9FS6|1|2|U|938, 9FS6|1|2|G|940, 9FS6|1|2|A|942

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS6|1|2|C|919
9FS6|1|2|U|920
9FS6|1|2|C|921
9FS6|1|2|A|922
9FS6|1|2|A|923
9FS6|1|2|U|924
9FS6|1|2|U|925
9FS6|1|2|OMG|926
*
9FS6|1|2|C|937
9FS6|1|2|U|938
9FS6|1|2|G|939
9FS6|1|2|G|940
9FS6|1|2|A|941
9FS6|1|2|A|942
9FS6|1|2|U|943
9FS6|1|2|C|944
9FS6|1|2|U|945
9FS6|1|2|U|946
9FS6|1|2|A|947
9FS6|1|2|C|948
*
9FS6|1|2|G|1184
9FS6|1|2|G|1185
9FS6|1|2|C|1186
9FS6|1|2|C|1187
9FS6|1|2|G|1188

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain L

Small ribosomal subunit protein uS10

Chain O

Small ribosomal subunit protein uS13

Chain P

Small ribosomal subunit protein uS14

Chain T

Small ribosomal subunit protein uS19

Chain c

Small ribosomal subunit protein eS25