J3_9FS6_015

3D structure

PDB id

9FS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAUG*CGCAGUUG*CGAG

Length

17 nucleotides

Bulged bases

9FS6|1|2|U|1203, 9FS6|1|2|U|1266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS6|1|2|C|1200
9FS6|1|2|A|1201
9FS6|1|2|A|1202
9FS6|1|2|U|1203
9FS6|1|2|G|1204
*
9FS6|1|2|C|1260
9FS6|1|2|G|1261
9FS6|1|2|C|1262
9FS6|1|2|A|1263
9FS6|1|2|G|1264
9FS6|1|2|U|1265
9FS6|1|2|U|1266
9FS6|1|2|G|1267
*
9FS6|1|2|C|1298
9FS6|1|2|G|1299
9FS6|1|2|A|1300
9FS6|1|2|G|1301

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain O

Small ribosomal subunit protein uS13

Chain U

Small ribosomal subunit protein eS19

Chain c

Small ribosomal subunit protein eS25