J3_9FS8_008

3D structure

PDB id

9FS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aEF1A-like mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS8|1|2|U|907
9FS8|1|2|G|908
9FS8|1|2|G|909
9FS8|1|2|A|910
*
9FS8|1|2|U|1198
9FS8|1|2|A|1199
9FS8|1|2|C|1200
*
9FS8|1|2|G|1301
9FS8|1|2|G|1302
9FS8|1|2|A|1303
9FS8|1|2|A|1304

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain H

Small ribosomal subunit protein uS7

Chain K

Small ribosomal subunit protein uS9

Chain O

Small ribosomal subunit protein uS13

Chain U

Small ribosomal subunit protein eS19