J3_9FS8_009

3D structure

PDB id

9FS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aEF1A-like mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUCAAUU(OMG)*CUGGAAUCUUAC*GGCCG

Length

25 nucleotides

Bulged bases

9FS8|1|2|U|938, 9FS8|1|2|G|940, 9FS8|1|2|A|942

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS8|1|2|C|919
9FS8|1|2|U|920
9FS8|1|2|C|921
9FS8|1|2|A|922
9FS8|1|2|A|923
9FS8|1|2|U|924
9FS8|1|2|U|925
9FS8|1|2|OMG|926
*
9FS8|1|2|C|937
9FS8|1|2|U|938
9FS8|1|2|G|939
9FS8|1|2|G|940
9FS8|1|2|A|941
9FS8|1|2|A|942
9FS8|1|2|U|943
9FS8|1|2|C|944
9FS8|1|2|U|945
9FS8|1|2|U|946
9FS8|1|2|A|947
9FS8|1|2|C|948
*
9FS8|1|2|G|1184
9FS8|1|2|G|1185
9FS8|1|2|C|1186
9FS8|1|2|C|1187
9FS8|1|2|G|1188

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain L

Small ribosomal subunit protein uS10

Chain O

Small ribosomal subunit protein uS13

Chain P

Small ribosomal subunit protein uS14

Chain T

Small ribosomal subunit protein uS19

Chain c

Small ribosomal subunit protein eS25