J3_9FS8_010

3D structure

PDB id

9FS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aEF1A-like mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGAC*GAGAG*CGAAAC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS8|1|2|G|954
9FS8|1|2|A|955
9FS8|1|2|G|956
9FS8|1|2|A|957
9FS8|1|2|C|958
*
9FS8|1|2|G|1000
9FS8|1|2|A|1001
9FS8|1|2|G|1002
9FS8|1|2|A|1003
9FS8|1|2|G|1004
*
9FS8|1|2|C|1173
9FS8|1|2|G|1174
9FS8|1|2|A|1175
9FS8|1|2|A|1176
9FS8|1|2|A|1177
9FS8|1|2|C|1178

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain P

Small ribosomal subunit protein uS14

Chain a

aS34