J3_9FS8_012

3D structure

PDB id

9FS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aEF1A-like mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UG*UGUC*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS8|1|2|U|1030
9FS8|1|2|G|1031
*
9FS8|1|2|U|1040
9FS8|1|2|G|1041
9FS8|1|2|U|1042
9FS8|1|2|C|1043
*
9FS8|1|2|G|1056
9FS8|1|2|C|1057
9FS8|1|2|A|1058
9FS8|1|2|A|1059

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain F

Small ribosomal subunit protein uS5

Chain b

LSU ribosomal protein S26E (Rps26E)