J3_9FS8_013

3D structure

PDB id

9FS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aEF1A-like mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAC*GGAC*GGAG

Length

11 nucleotides

Bulged bases

9FS8|1|2|A|1146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FS8|1|2|C|1073
9FS8|1|2|A|1074
9FS8|1|2|C|1075
*
9FS8|1|2|G|1119
9FS8|1|2|G|1120
9FS8|1|2|A|1121
9FS8|1|2|C|1122
*
9FS8|1|2|G|1144
9FS8|1|2|G|1145
9FS8|1|2|A|1146
9FS8|1|2|G|1147

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain K

Small ribosomal subunit protein uS9

Chain L

Small ribosomal subunit protein uS10

Chain P

Small ribosomal subunit protein uS14

Chain S

Small ribosomal subunit protein eS17