J3_9FSF_009

3D structure

PDB id

9FSF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUCAAUU(OMG)*CUGGAAUCUUAC*GGCCG

Length

25 nucleotides

Bulged bases

9FSF|1|2|U|938, 9FSF|1|2|G|940, 9FSF|1|2|A|942

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FSF|1|2|C|919
9FSF|1|2|U|920
9FSF|1|2|C|921
9FSF|1|2|A|922
9FSF|1|2|A|923
9FSF|1|2|U|924
9FSF|1|2|U|925
9FSF|1|2|OMG|926
*
9FSF|1|2|C|937
9FSF|1|2|U|938
9FSF|1|2|G|939
9FSF|1|2|G|940
9FSF|1|2|A|941
9FSF|1|2|A|942
9FSF|1|2|U|943
9FSF|1|2|C|944
9FSF|1|2|U|945
9FSF|1|2|U|946
9FSF|1|2|A|947
9FSF|1|2|C|948
*
9FSF|1|2|G|1184
9FSF|1|2|G|1185
9FSF|1|2|C|1186
9FSF|1|2|C|1187
9FSF|1|2|G|1188

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain L

Small ribosomal subunit protein uS10

Chain O

Small ribosomal subunit protein uS13

Chain P

Small ribosomal subunit protein uS14

Chain T

Small ribosomal subunit protein uS19

Chain c

Small ribosomal subunit protein eS25