J3_9FY0_002

3D structure

PDB id

9FY0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGCUAAG*CGCGAAACG*C(OMG)C

Length

20 nucleotides

Bulged bases

9FY0|1|2|A|47

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FY0|1|2|G|41
9FY0|1|2|G|42
9FY0|1|2|G|43
9FY0|1|2|C|44
9FY0|1|2|U|45
9FY0|1|2|A|46
9FY0|1|2|A|47
9FY0|1|2|G|48
*
9FY0|1|2|C|364
9FY0|1|2|G|365
9FY0|1|2|C|366
9FY0|1|2|G|367
9FY0|1|2|A|368
9FY0|1|2|A|369
9FY0|1|2|A|370
9FY0|1|2|C|371
9FY0|1|2|G|372
*
9FY0|1|2|C|398
9FY0|1|2|OMG|399
9FY0|1|2|C|400

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain N

Small ribosomal subunit protein uS12