J3_9G1Z_016
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAUGG*CGUUUCAACG*CAACCAU
- Length
- 23 nucleotides
- Bulged bases
- 9G1Z|1|1|U|1550, 9G1Z|1|1|C|1552, 9G1Z|1|1|A|1554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G1Z_016 not in the Motif Atlas
- Homologous match to J3_8CRE_016
- Geometric discrepancy: 0.3143
- The information below is about J3_8CRE_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_65403.1
- Basepair signature
- cWW-tSH-tHW-F-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
9G1Z|1|1|A|1533
9G1Z|1|1|G|1534
9G1Z|1|1|A|1535
9G1Z|1|1|U|1536
9G1Z|1|1|G|1537
9G1Z|1|1|G|1538
*
9G1Z|1|1|C|1547
9G1Z|1|1|G|1548
9G1Z|1|1|U|1549
9G1Z|1|1|U|1550
9G1Z|1|1|U|1551
9G1Z|1|1|C|1552
9G1Z|1|1|A|1553
9G1Z|1|1|A|1554
9G1Z|1|1|C|1555
9G1Z|1|1|G|1556
*
9G1Z|1|1|C|1574
9G1Z|1|1|A|1575
9G1Z|1|1|A|1576
9G1Z|1|1|C|1577
9G1Z|1|1|C|1578
9G1Z|1|1|A|1579
9G1Z|1|1|U|1580
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 8
- Ribosomal 60S subunit protein L25
- Chain AK
- Ribosomal protein L37
- Chain j
- Ribosomal 60S subunit protein L2A
- Chain p
- 60S ribosomal protein L8
- Chain v
- Ribosomal protein L15
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