J3_9G1Z_017

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9G1Z_017 not in the Motif Atlas

Homologous match to J3_8CRE_017

Geometric discrepancy: 0.0836

The information below is about J3_8CRE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75962.2

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

9G1Z|1|1|C|1627
9G1Z|1|1|A|1628
*
9G1Z|1|1|U|1637
9G1Z|1|1|A|1638
9G1Z|1|1|A|1639
9G1Z|1|1|C|1640
9G1Z|1|1|U|1641
*
9G1Z|1|1|A|1806
9G1Z|1|1|G|1807

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L27

Chain AH

Large ribosomal subunit protein eL34

Chain p

60S ribosomal protein L8