J3_9G1Z_021
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*(OMG)GUGCC
- Length
- 21 nucleotides
- Bulged bases
- 9G1Z|1|1|C|2732, 9G1Z|1|1|C|2769
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G1Z_021 not in the Motif Atlas
- Homologous match to J3_8CRE_021
- Geometric discrepancy: 0.0506
- The information below is about J3_8CRE_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9G1Z|1|1|G|2623
9G1Z|1|1|U|2624
9G1Z|1|1|C|2625
*
9G1Z|1|1|G|2726
9G1Z|1|1|C|2727
9G1Z|1|1|C|2728
9G1Z|1|1|U|2729
9G1Z|1|1|A|2730
9G1Z|1|1|U|2731
9G1Z|1|1|C|2732
9G1Z|1|1|G|2733
9G1Z|1|1|A|2734
9G1Z|1|1|U|2735
9G1Z|1|1|C|2736
9G1Z|1|1|C|2737
*
9G1Z|1|1|OMG|2765
9G1Z|1|1|G|2766
9G1Z|1|1|U|2767
9G1Z|1|1|G|2768
9G1Z|1|1|C|2769
9G1Z|1|1|C|2770
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 10
- Transfer RNA; tRNA
- Chain 2
- Ribosomal 60S subunit protein L21A
- Chain AB
- Ribosomal 60S subunit protein L28
- Chain AP
- Ribosomal 60S subunit protein L42A
- Chain y
- Ribosomal 60S subunit protein L18A
Coloring options: