J3_9G1Z_022
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 9G1Z|1|1|A|2675, 9G1Z|1|1|A|2677
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G1Z_022 not in the Motif Atlas
- Homologous match to J3_8P9A_062
- Geometric discrepancy: 0.0745
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9G1Z|1|1|C|2636
9G1Z|1|1|U|2637
9G1Z|1|1|C|2638
*
9G1Z|1|1|G|2662
9G1Z|1|1|A|2663
9G1Z|1|1|A|2664
*
9G1Z|1|1|U|2673
9G1Z|1|1|A|2674
9G1Z|1|1|A|2675
9G1Z|1|1|A|2676
9G1Z|1|1|A|2677
9G1Z|1|1|G|2678
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- Ribosomal 60S subunit protein L21A
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain AP
- Ribosomal 60S subunit protein L42A
- Chain m
- Ribosomal 60S subunit protein L5
- Chain s
- Ribosomal 60S subunit protein L11B
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