J3_9G1Z_027
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 9G1Z|1|4|U|60, 9G1Z|1|4|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G1Z_027 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0681
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9G1Z|1|4|A|44
9G1Z|1|4|C|45
*
9G1Z|1|4|G|58
9G1Z|1|4|A|59
9G1Z|1|4|U|60
9G1Z|1|4|A|61
9G1Z|1|4|C|62
9G1Z|1|4|G|63
9G1Z|1|4|U|64
*
9G1Z|1|4|A|96
9G1Z|1|4|A|97
9G1Z|1|4|U|98
9G1Z|1|4|C|99
9G1Z|1|4|U|100
Current chains
- Chain 4
- 5.8S rRNA
Nearby chains
- Chain 8
- Ribosomal 60S subunit protein L25
- Chain AI
- Ribosomal 60S subunit protein L35A
- Chain AK
- Ribosomal protein L37
- Chain AM
- 60S ribosomal protein L39
Coloring options: