J3_9G1Z_029

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9G1Z|1|A|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9G1Z_029 not in the Motif Atlas

Homologous match to J3_8CRE_072

Geometric discrepancy: 0.0598

The information below is about J3_8CRE_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9G1Z|1|A|A|41
9G1Z|1|A|G|42
9G1Z|1|A|A|43
9G1Z|1|A|U|44
9G1Z|1|A|U|45
9G1Z|1|A|A|46
9G1Z|1|A|A|47
9G1Z|1|A|G|48
*
9G1Z|1|A|C|429
9G1Z|1|A|G|430
9G1Z|1|A|C|431
9G1Z|1|A|G|432
9G1Z|1|A|C|433
9G1Z|1|A|A|434
9G1Z|1|A|A|435
9G1Z|1|A|A|436
9G1Z|1|A|U|437
*
9G1Z|1|A|A|462
9G1Z|1|A|G|463
9G1Z|1|A|U|464

Current chains

Chain A

18S rRNA

Nearby chains

Chain K

Ribosomal 40S subunit protein S9B

Chain Y

Ribosomal 40S subunit protein S23B