J3_9G4Q_002

3D structure

PDB id

9G4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the salivarius-1 RNA motif

Experimental method

X-RAY DIFFRACTION

Resolution

1.99 Å

Loop

Sequence

CAUC*GUCAC*GG

Length

11 nucleotides

Bulged bases

9G4Q|1|B|U|8

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9G4Q_002 not in the Motif Atlas

Geometric match to J3_9G4Q_001

Geometric discrepancy: 0.1709

The information below is about J3_9G4Q_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_93436.1

Basepair signature

cWW-cHW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9G4Q|1|B|C|6
9G4Q|1|B|A|7
9G4Q|1|B|U|8
9G4Q|1|B|C|9
*
9G4Q|1|B|G|26
9G4Q|1|B|U|27
9G4Q|1|B|C|28
9G4Q|1|B|A|29
9G4Q|1|B|C|30
*
9G4Q|1|B|G|46
9G4Q|1|B|G|47

Current chains

Chain B

RNA (52-MER)

Nearby chains