J3_9G4R_001

3D structure

PDB id

9G4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the DUF2693-FD RNA motif

Experimental method

X-RAY DIFFRACTION

Resolution

2.53 Å

Loop

Sequence

CAGAC*GGCAAC*GG

Length

13 nucleotides

Bulged bases

9G4R|1|A|A|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17025.1

Basepair signature

cWW-cSS-cWW-cHW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9G4R|1|A|C|6
9G4R|1|A|A|7
9G4R|1|A|G|8
9G4R|1|A|A|9
9G4R|1|A|C|10
*
9G4R|1|A|G|20
9G4R|1|A|G|21
9G4R|1|A|C|22
9G4R|1|A|A|23
9G4R|1|A|A|24
9G4R|1|A|C|25
*
9G4R|1|A|G|41
9G4R|1|A|G|42

Current chains

Chain A

RNA (47-MER)

Nearby chains