J3_9G54_001

3D structure

PDB id

9G54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Group II intron assembly intermediate Domain 1, 2, 3 and 4 "Partly open" state

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GAG*CGAAC*GC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G54|1|A|G|133
9G54|1|A|A|134
9G54|1|A|G|135
*
9G54|1|A|C|141
9G54|1|A|G|142
9G54|1|A|A|143
9G54|1|A|A|144
9G54|1|A|C|145
*
9G54|1|A|G|229
9G54|1|A|C|230

Current chains

Chain A

GROUP IIC INTRON

Nearby chains