J3_9G5B_004
3D structure
- PDB id
- 9G5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Assembly intermediate of human mitochondrial ribosome small subunit (State A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGGA*UAC*GGAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G5B_004 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.2589
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9G5B|1|A|A|1198
9G5B|1|A|G|1199
9G5B|1|A|G|1200
9G5B|1|A|A|1201
*
9G5B|1|A|U|1364
9G5B|1|A|A|1365
9G5B|1|A|C|1366
*
9G5B|1|A|G|1421
9G5B|1|A|G|1422
9G5B|1|A|A|1423
9G5B|1|A|U|1424
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain F
- 28S ribosomal protein S7, mitochondrial
- Chain G
- 28S ribosomal protein S9, mitochondrial
Coloring options: