J3_9G5D_006

3D structure

PDB id

9G5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAAUC*GAUCAACCUCAC*GCAA

Length

23 nucleotides

Bulged bases

9G5D|1|A|U|1229, 9G5D|1|A|C|1230, 9G5D|1|A|A|1231, 9G5D|1|A|A|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G5D|1|A|U|1210
9G5D|1|A|G|1211
9G5D|1|A|U|1212
9G5D|1|A|A|1213
9G5D|1|A|A|1214
9G5D|1|A|U|1215
9G5D|1|A|C|1216
*
9G5D|1|A|G|1227
9G5D|1|A|A|1228
9G5D|1|A|U|1229
9G5D|1|A|C|1230
9G5D|1|A|A|1231
9G5D|1|A|A|1232
9G5D|1|A|C|1233
9G5D|1|A|C|1234
9G5D|1|A|U|1235
9G5D|1|A|C|1236
9G5D|1|A|A|1237
9G5D|1|A|C|1238
*
9G5D|1|A|G|1351
9G5D|1|A|C|1352
9G5D|1|A|A|1353
9G5D|1|A|A|1354

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain H

28S ribosomal protein S10, mitochondrial

Chain K

28S ribosomal protein S14, mitochondrial

Chain a

Putative ribosome-binding factor A, mitochondrial