J3_9G5D_008

3D structure

PDB id

9G5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit (State C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUUU*AAACUAC*GGUG

Length

16 nucleotides

Bulged bases

9G5D|1|A|U|1369, 9G5D|1|A|C|1385, 9G5D|1|A|U|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G5D|1|A|C|1366
9G5D|1|A|A|1367
9G5D|1|A|U|1368
9G5D|1|A|U|1369
9G5D|1|A|U|1370
*
9G5D|1|A|A|1382
9G5D|1|A|A|1383
9G5D|1|A|A|1384
9G5D|1|A|C|1385
9G5D|1|A|U|1386
9G5D|1|A|A|1387
9G5D|1|A|C|1388
*
9G5D|1|A|G|1418
9G5D|1|A|G|1419
9G5D|1|A|U|1420
9G5D|1|A|G|1421

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain F

28S ribosomal protein S7, mitochondrial

Chain X

28S ribosomal protein S29, mitochondrial