J3_9G8O_010
3D structure
- PDB id
- 9G8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 40S ribosome bound by a SKI238-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9G8O|1|S2|G|1256, 9G8O|1|S2|A|1258, 9G8O|1|S2|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9G8O_010 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1189
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9G8O|1|S2|C|1237
9G8O|1|S2|U|1238
9G8O|1|S2|U|1239
9G8O|1|S2|A|1240
9G8O|1|S2|A|1241
9G8O|1|S2|U|1242
9G8O|1|S2|U|1243
9G8O|1|S2|U|1244
*
9G8O|1|S2|G|1255
9G8O|1|S2|G|1256
9G8O|1|S2|G|1257
9G8O|1|S2|A|1258
9G8O|1|S2|A|1259
9G8O|1|S2|A|1260
9G8O|1|S2|C|1261
9G8O|1|S2|C|1262
9G8O|1|S2|U|1263
9G8O|1|S2|C|1264
9G8O|1|S2|A|1265
9G8O|1|S2|C|1266
*
9G8O|1|S2|G|1516
9G8O|1|S2|G|1517
9G8O|1|S2|C|1518
9G8O|1|S2|U|1519
9G8O|1|S2|G|1520
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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