J3_9GGR_001

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GGR_001 not in the Motif Atlas

Geometric match to J3_5J7L_001

Geometric discrepancy: 0.0894

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9GGR|1|0|G|46
9GGR|1|0|C|47
*
9GGR|1|0|G|361
9GGR|1|0|G|362
9GGR|1|0|A|363
9GGR|1|0|A|364
9GGR|1|0|U|365
9GGR|1|0|A|366
9GGR|1|0|U|367
*
9GGR|1|0|A|393
9GGR|1|0|G|394
9GGR|1|0|C|395

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS12

Chain I

Small ribosomal subunit protein bS16