J3_9GGR_011

3D structure

PDB id

9GGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9GGR|1|0|U|1212, 9GGR|1|0|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GGR_011 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1291

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9GGR|1|0|C|990
9GGR|1|0|U|991
9GGR|1|0|U|992
9GGR|1|0|G|993
9GGR|1|0|A|994
9GGR|1|0|C|995
9GGR|1|0|A|996
9GGR|1|0|U|997
*
9GGR|1|0|A|1044
9GGR|1|0|C|1045
9GGR|1|0|A|1046
9GGR|1|0|G|1047
*
9GGR|1|0|C|1210
9GGR|1|0|U|1211
9GGR|1|0|U|1212
9GGR|1|0|A|1213
9GGR|1|0|C|1214
9GGR|1|0|G|1215

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein uS14