J3_9GGR_049
3D structure
- PDB id
- 9GGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 9GGR|1|AV|A|2518, 9GGR|1|AV|U|2519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GGR_049 not in the Motif Atlas
- Homologous match to J3_5J7L_046
- Geometric discrepancy: 0.1048
- The information below is about J3_5J7L_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9GGR|1|AV|C|2517
9GGR|1|AV|A|2518
9GGR|1|AV|U|2519
9GGR|1|AV|C|2520
*
9GGR|1|AV|G|2545
9GGR|1|AV|U|2546
9GGR|1|AV|A|2547
*
9GGR|1|AV|U|2561
9GGR|1|AV|U|2562
9GGR|1|AV|U|2563
9GGR|1|AV|A|2564
9GGR|1|AV|A|2565
9GGR|1|AV|A|2566
9GGR|1|AV|G|2567
Current chains
- Chain AV
- 23S ribosomal RNA
Nearby chains
- Chain AY
- 50S ribosomal protein L3
- Chain Af
- Large ribosomal subunit protein uL14
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