J3_9GHA_016

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

UAU*AGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

9GHA|1|A|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHA_016 not in the Motif Atlas

Homologous match to J3_5J7L_054

Geometric discrepancy: 0.1573

The information below is about J3_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9GHA|1|A|U|1116
9GHA|1|A|A|1117
9GHA|1|A|U|1118
*
9GHA|1|A|A|1155
9GHA|1|A|G|1156
9GHA|1|A|A|1157
9GHA|1|A|C|1158
9GHA|1|A|U|1159
9GHA|1|A|G|1160
9GHA|1|A|C|1161
*
9GHA|1|A|G|1175
9GHA|1|A|A|1176
9GHA|1|A|G|1177
9GHA|1|A|G|1178
9GHA|1|A|A|1179
9GHA|1|A|A|1180
9GHA|1|A|G|1181
9GHA|1|A|G|1182
9GHA|1|A|U|1183
9GHA|1|A|G|1184

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14