J3_9GHA_023

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9GHA|1|a|U|686, 9GHA|1|a|A|792, 9GHA|1|a|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHA_023 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0399

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9GHA|1|a|U|683
9GHA|1|a|G|684
9GHA|1|a|A|685
9GHA|1|a|U|686
9GHA|1|a|C|687
9GHA|1|a|U|688
9GHA|1|a|A|689
*
9GHA|1|a|U|773
9GHA|1|a|G|774
9GHA|1|a|G|775
*
9GHA|1|a|C|791
9GHA|1|a|A|792
9GHA|1|a|A|793
9GHA|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2