3D structure

PDB id
9GHA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GHA_024 not in the Motif Atlas
Homologous match to J3_5J7L_039
Geometric discrepancy: 0.0442
The information below is about J3_5J7L_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.7
Basepair signature
cWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

9GHA|1|a|C|698
9GHA|1|a|A|699
9GHA|1|a|G|700
*
9GHA|1|a|C|732
9GHA|1|a|G|733
9GHA|1|a|A|734
9GHA|1|a|A|735
9GHA|1|a|C|736
*
9GHA|1|a|G|760
9GHA|1|a|A|761
9GHA|1|a|U|762
9GHA|1|a|G|763

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L2

Coloring options:


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