3D structure

PDB id
9GHA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
9GHA|1|a|A|2388, 9GHA|1|a|U|2390, 9GHA|1|a|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GHA_031 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.0626
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

9GHA|1|a|G|2282
9GHA|1|a|C|2283
9GHA|1|a|A|2284
*
9GHA|1|a|U|2384
9GHA|1|a|C|2385
9GHA|1|a|A|2386
9GHA|1|a|U|2387
9GHA|1|a|A|2388
9GHA|1|a|G|2389
9GHA|1|a|U|2390
9GHA|1|a|G|2391
9GHA|1|a|A|2392
9GHA|1|a|U|2393
9GHA|1|a|C|2394
9GHA|1|a|C|2395
*
9GHA|1|a|G|2421
9GHA|1|a|C|2422
9GHA|1|a|U|2423
9GHA|1|a|C|2424
9GHA|1|a|A|2425
9GHA|1|a|A|2426
9GHA|1|a|C|2427

Current chains

Chain a
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L33
Chain 2
50S ribosomal protein L35
Chain 8
Transfer RNA; tRNA
Chain k
50S ribosomal protein L15
Chain v
50S ribosomal protein L27

Coloring options:


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