J3_9GHB_022

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9GHB|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHB_022 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.04

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9GHB|1|a|G|297
9GHB|1|a|G|298
9GHB|1|a|A|299
9GHB|1|a|A|300
9GHB|1|a|G|301
*
9GHB|1|a|C|316
9GHB|1|a|G|317
9GHB|1|a|C|318
9GHB|1|a|G|319
9GHB|1|a|A|320
9GHB|1|a|U|321
9GHB|1|a|A|322
9GHB|1|a|C|323
9GHB|1|a|A|324
9GHB|1|a|G|325
*
9GHB|1|a|C|337
9GHB|1|a|G|338
9GHB|1|a|U|339
9GHB|1|a|A|340
9GHB|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24