J3_9GHB_024

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHB_024 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0421

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9GHB|1|a|C|698
9GHB|1|a|A|699
9GHB|1|a|G|700
*
9GHB|1|a|C|732
9GHB|1|a|G|733
9GHB|1|a|A|734
9GHB|1|a|A|735
9GHB|1|a|C|736
*
9GHB|1|a|G|760
9GHB|1|a|A|761
9GHB|1|a|U|762
9GHB|1|a|G|763

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2