J3_9GHB_034

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9GHB|1|a|A|2518, 9GHB|1|a|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHB_034 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0413

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9GHB|1|a|C|2517
9GHB|1|a|A|2518
9GHB|1|a|U|2519
9GHB|1|a|C|2520
*
9GHB|1|a|G|2545
9GHB|1|a|U|2546
9GHB|1|a|A|2547
*
9GHB|1|a|U|2561
9GHB|1|a|U|2562
9GHB|1|a|U|2563
9GHB|1|a|A|2564
9GHB|1|a|A|2565
9GHB|1|a|A|2566
9GHB|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14