J3_9GHC_024

3D structure

PDB id

9GHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-release fusidic acid-locked Escherichia coli 70S ribosome with Staphylococus aureus EF-G and FusB (FusB-EF-G-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHC_024 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0627

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9GHC|1|a|C|698
9GHC|1|a|A|699
9GHC|1|a|G|700
*
9GHC|1|a|C|732
9GHC|1|a|G|733
9GHC|1|a|A|734
9GHC|1|a|A|735
9GHC|1|a|C|736
*
9GHC|1|a|G|760
9GHC|1|a|A|761
9GHC|1|a|U|762
9GHC|1|a|G|763

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2