J3_9GHD_037
3D structure
- PDB id
- 9GHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.41 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 9GHD|1|b|U|14, 9GHD|1|b|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GHD_037 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.076
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
9GHD|1|b|G|10
9GHD|1|b|C|11
9GHD|1|b|C|12
9GHD|1|b|G|13
9GHD|1|b|U|14
9GHD|1|b|A|15
9GHD|1|b|G|16
*
9GHD|1|b|C|68
9GHD|1|b|G|69
9GHD|1|b|C|70
*
9GHD|1|b|G|106
9GHD|1|b|G|107
9GHD|1|b|A|108
9GHD|1|b|A|109
9GHD|1|b|C|110
Current chains
- Chain b
- 5S rRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- 50S ribosomal protein L18
- Chain u
- 50S ribosomal protein L25
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: