J3_9GHE_023

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9GHE|1|a|U|686, 9GHE|1|a|A|792, 9GHE|1|a|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHE_023 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0415

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9GHE|1|a|U|683
9GHE|1|a|G|684
9GHE|1|a|A|685
9GHE|1|a|U|686
9GHE|1|a|C|687
9GHE|1|a|U|688
9GHE|1|a|A|689
*
9GHE|1|a|U|773
9GHE|1|a|G|774
9GHE|1|a|G|775
*
9GHE|1|a|C|791
9GHE|1|a|A|792
9GHE|1|a|A|793
9GHE|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2