J3_9GHE_024

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHE_024 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0373

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9GHE|1|a|C|698
9GHE|1|a|A|699
9GHE|1|a|G|700
*
9GHE|1|a|C|732
9GHE|1|a|G|733
9GHE|1|a|A|734
9GHE|1|a|A|735
9GHE|1|a|C|736
*
9GHE|1|a|G|760
9GHE|1|a|A|761
9GHE|1|a|U|762
9GHE|1|a|G|763

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2