J3_9GHE_034

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9GHE|1|a|A|2518, 9GHE|1|a|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHE_034 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.038

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

9GHE|1|a|C|2517
9GHE|1|a|A|2518
9GHE|1|a|U|2519
9GHE|1|a|C|2520
*
9GHE|1|a|G|2545
9GHE|1|a|U|2546
9GHE|1|a|A|2547
*
9GHE|1|a|U|2561
9GHE|1|a|U|2562
9GHE|1|a|U|2563
9GHE|1|a|A|2564
9GHE|1|a|A|2565
9GHE|1|a|A|2566
9GHE|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14