J3_9GHF_010

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

9GHF|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHF_010 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.1306

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

9GHF|1|A|C|990
9GHF|1|A|U|991
9GHF|1|A|U|992
9GHF|1|A|G|993
*
9GHF|1|A|C|1045
9GHF|1|A|A|1046
9GHF|1|A|G|1047
*
9GHF|1|A|C|1210
9GHF|1|A|U|1211
9GHF|1|A|U|1212
9GHF|1|A|A|1213
9GHF|1|A|C|1214
9GHF|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14