3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
9GHF|1|A|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9GHF_011 not in the Motif Atlas
Homologous match to J3_5J7L_053
Geometric discrepancy: 0.1132
The information below is about J3_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

9GHF|1|A|C|990
9GHF|1|A|U|991
9GHF|1|A|U|992
9GHF|1|A|G|993
9GHF|1|A|A|994
9GHF|1|A|C|995
9GHF|1|A|A|996
9GHF|1|A|U|997
*
9GHF|1|A|A|1044
9GHF|1|A|C|1045
9GHF|1|A|A|1046
9GHF|1|A|G|1047
*
9GHF|1|A|C|1210
9GHF|1|A|U|1211
9GHF|1|A|U|1212
9GHF|1|A|A|1213
9GHF|1|A|C|1214
9GHF|1|A|G|1215

Current chains

Chain A
16S rRNA

Nearby chains

Chain N
30S ribosomal protein S14

Coloring options:


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