J3_9GHF_022

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9GHF|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHF_022 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0426

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9GHF|1|a|G|297
9GHF|1|a|G|298
9GHF|1|a|A|299
9GHF|1|a|A|300
9GHF|1|a|G|301
*
9GHF|1|a|C|316
9GHF|1|a|G|317
9GHF|1|a|C|318
9GHF|1|a|G|319
9GHF|1|a|A|320
9GHF|1|a|U|321
9GHF|1|a|A|322
9GHF|1|a|C|323
9GHF|1|a|A|324
9GHF|1|a|G|325
*
9GHF|1|a|C|337
9GHF|1|a|G|338
9GHF|1|a|U|339
9GHF|1|a|A|340
9GHF|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24