J3_9GHF_023

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9GHF|1|a|U|686, 9GHF|1|a|A|792, 9GHF|1|a|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHF_023 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0447

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9GHF|1|a|U|683
9GHF|1|a|G|684
9GHF|1|a|A|685
9GHF|1|a|U|686
9GHF|1|a|C|687
9GHF|1|a|U|688
9GHF|1|a|A|689
*
9GHF|1|a|U|773
9GHF|1|a|G|774
9GHF|1|a|G|775
*
9GHF|1|a|C|791
9GHF|1|a|A|792
9GHF|1|a|A|793
9GHF|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2