J3_9GHG_010

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

9GHG|1|A|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHG_010 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.0986

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9GHG|1|A|C|1335
9GHG|1|A|G|1336
9GHG|1|A|A|1337
9GHG|1|A|U|1338
9GHG|1|A|U|1339
9GHG|1|A|G|1340
*
9GHG|1|A|C|1669
9GHG|1|A|A|1670
9GHG|1|A|A|1671
*
9GHG|1|A|U|1683
9GHG|1|A|A|1684
9GHG|1|A|A|1685
9GHG|1|A|G|1686

Current chains

Chain A

23S rRNA

Nearby chains