J3_9GHG_018

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CA*UAUAAG*CGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GHG_018 not in the Motif Atlas

Homologous match to J3_9DFE_018

Geometric discrepancy: 0.3724

The information below is about J3_9DFE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24127.1

Basepair signature

cWW-F-cWW-tWH-F-F-tHS-cWW

Number of instances in this motif group

2

Unit IDs

9GHG|1|A|C|2816
9GHG|1|A|A|2817
*
9GHG|1|A|U|2826
9GHG|1|A|A|2827
9GHG|1|A|U|2828
9GHG|1|A|A|2829
9GHG|1|A|A|2830
9GHG|1|A|G|2831
*
9GHG|1|A|C|2909
9GHG|1|A|G|2910
9GHG|1|A|A|2911
9GHG|1|A|A|2912
9GHG|1|A|G|2913

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L3