J3_9GHG_027
3D structure
- PDB id
- 9GHG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9GHG_027 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0808
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
9GHG|1|a|C|945
9GHG|1|a|A|946
9GHG|1|a|A|947
9GHG|1|a|G|948
*
9GHG|1|a|C|1354
9GHG|1|a|U|1355
9GHG|1|a|A|1356
9GHG|1|a|G|1357
9GHG|1|a|U|1358
9GHG|1|a|A|1359
9GHG|1|a|A|1360
*
9GHG|1|a|U|1382
9GHG|1|a|G|1383
9GHG|1|a|A|1384
9GHG|1|a|A|1385
9GHG|1|a|U|1386
9GHG|1|a|A|1387
9GHG|1|a|C|1388
9GHG|1|a|G|1389
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain D
- Transfer RNA; tRNA
- Chain h
- 30S ribosomal protein S7
- Chain j
- 30S ribosomal protein S9
Coloring options: