J3_9GR1_011

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9GR1|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GR1_011 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1137

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9GR1|1|A|C|990
9GR1|1|A|U|991
9GR1|1|A|U|992
9GR1|1|A|G|993
9GR1|1|A|A|994
9GR1|1|A|C|995
9GR1|1|A|A|996
9GR1|1|A|U|997
*
9GR1|1|A|A|1044
9GR1|1|A|C|1045
9GR1|1|A|A|1046
9GR1|1|A|G|1047
*
9GR1|1|A|C|1210
9GR1|1|A|U|1211
9GR1|1|A|U|1212
9GR1|1|A|A|1213
9GR1|1|A|C|1214
9GR1|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14