J3_9GR1_022

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9GR1|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GR1_022 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0347

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9GR1|1|a|G|297
9GR1|1|a|G|298
9GR1|1|a|A|299
9GR1|1|a|A|300
9GR1|1|a|G|301
*
9GR1|1|a|C|316
9GR1|1|a|G|317
9GR1|1|a|C|318
9GR1|1|a|G|319
9GR1|1|a|A|320
9GR1|1|a|U|321
9GR1|1|a|A|322
9GR1|1|a|C|323
9GR1|1|a|A|324
9GR1|1|a|G|325
*
9GR1|1|a|C|337
9GR1|1|a|G|338
9GR1|1|a|U|339
9GR1|1|a|A|340
9GR1|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24