J3_9GR1_023

3D structure

PDB id

9GR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-TEC complex in delivery state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9GR1|1|a|U|688, 9GR1|1|a|A|794, 9GR1|1|a|A|795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9GR1_023 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0453

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9GR1|1|a|U|685
9GR1|1|a|G|686
9GR1|1|a|A|687
9GR1|1|a|U|688
9GR1|1|a|C|689
9GR1|1|a|U|690
9GR1|1|a|A|691
*
9GR1|1|a|U|775
9GR1|1|a|G|776
9GR1|1|a|G|777
*
9GR1|1|a|C|793
9GR1|1|a|A|794
9GR1|1|a|A|795
9GR1|1|a|A|796

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2